PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 359aa    MW: 40090 Da    PI: 8.4172
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228850.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-1648107155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  XP_008228850.1  48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAARAYDLAALKYWG 107
                     57*******************999955656446*************************98 PP

2AP251.23.1e-16150201155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_008228850.1 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 201
                     89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-1748116IPR016177DNA-binding domain
PfamPF008474.0E-1248107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1649115IPR001471AP2/ERF domain
SMARTSM003804.1E-2849121IPR001471AP2/ERF domain
PROSITE profilePS5103220.58749115IPR001471AP2/ERF domain
PRINTSPR003674.1E-65061IPR001471AP2/ERF domain
CDDcd000183.72E-23150211No hitNo description
SuperFamilySSF541711.05E-17150211IPR016177DNA-binding domain
PfamPF008475.6E-12150201IPR001471AP2/ERF domain
PROSITE profilePS5103218.334151209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17151210IPR001471AP2/ERF domain
SMARTSM003801.2E-24151215IPR001471AP2/ERF domain
PRINTSPR003674.1E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAKTSQQNQK NTASSNNSNS NNTNSTATTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQVYLGAYDD EEAAARAYDL AALKYWGQDT ILNFPLDTYP  120
EELKEMESQS KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAT AYDMAAIEYR GLNAVTNFDL SRYIKSLCPN NQNVPNNPQP NPNGDLGPTQ  240
NPNSNLGLGF IPNYHSSSSS ASESTVALPR PGNGASASSA LGLLLQSPKF KEMLERTSTS  300
STDCSSTLSE PDIPRRSFPD DIQTYFDCQD LNSYAEGDDI IFGGLHSFAS PVFHCELDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228850.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-125AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM5X5J70.0M5X5J7_PRUPE; Uncharacterized protein
STRINGPOPTR_0003s18350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-99ARIA-interacting double AP2 domain protein